The EGR tube has
nothing to do with the catalysts, nor the Thermactor system(s). Leave the EGR tube alone, and make sure it's intact, or you'll be sucking raw air into the
intake manifold. Been there, done that, not cool. Also, make sure that your Thermactor pipes have a home. Otherwise you'll get backfiring and a screwed-up signal from the HEGO, and aren't cool either.
The only backpressure issue you'll have is a $hitload LESS. Which is a good thing.
Paul: it won't do any harm to the way the EEC does its thing. The only FSB's that would are 1996 models or those with OBD-II, because they have HEGO's after the catalyst to make sure it's working. You
can use a plug-in module on those years to fool the computer, however on your 1991 model this isn't a worry. I see in your profile that you've already disconnected the air pump, so it's very possible you already have a clogged cat. BTW, you ready for the 'big snow'?
FYI, we used to call it "rodding the cat" when punching the catalyst beds out with a piece of concrete re-bar. Works well, looks stock, and makes the shell act as a resonator. God I love Michigan....but for this reason only...lol.