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One valve cover should have a pcv valve hooked up to engine vacuum on the intake manifold and the other valve cover should have a breather filter. The side with the pcv valve is keeping a slight vacuum on the crankcase and the breather filter is constantly filtering and letting in new air to replace what's being "sucked" in the intake. If you don't have it set up like this then your crankcase will maintain a positive pressure and blow out oil and possilbly other stuff.